rs26977577 SNP Detail

Summary

• ID
  rs26977577
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52170758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTATAT GCCCTTAGGC
  CAGGCTGAGC AAAGAGCGGA GGCCTAGCTC CAAGGCCAAT AGGCAGGGAT GACCGGCATA
  TTGCCTGTCT TTCTACAGAG GAAGTGTGGG AGAGGCTCAG CTTGGGCAAG AGATTCCCTG
  CACCCAAGGT CCTTGCAAGA CACTCCTTAC CTGTTAAGAG AATGAGGGTG TCGTTCCCAG
  S
  ACCACGTGTG AGCCTTGAAG TCAGGTGACA ATGTGCTCCC CACAAACATG GGATGACCCA
  ACTTTGCTTT GTAAAACCAA ACTATCTTCG GAACACCCAC AGTCCTTCAT GAGTTGCCAG
  CTACTTTTAC TTTTTTGACC TTTATTTGCT GCGCGGTCTC TCAGGTTTGC TAGAGACTCT
  CTCTTGGGCC AGGAAGACGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37212209	NES08446305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs26977577					SNP	G	G	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212209	NES08446305	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52170758 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	1899 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	70 bp upstream
Tssr107875	transcription start site region 107875	820 bp upstream
Tssr107876	transcription start site region 107876	276 bp downstream
Tssr107877	transcription start site region 107877	308 bp downstream
Tssr107878	transcription start site region 107878	1845 bp downstream
Tssr107879	transcription start site region 107879	1902 bp downstream