rs26977578 SNP Detail

Summary

• ID
  rs26977578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52170595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCTCTG GGCCAGGCTC
  AAGCTGACCT GTTTAGATAG ATGTCTCTGA TGTAACCATG TGGCCATCCC ACTGACAGGG
  CAGAGAGGGT CCCTGGAGCA GACTTTCCCT GGTACATAGG AAGGCCTACC CACTGGCCTT
  TGGCATCTCA GCATAACTGC TGATCTCCTA TATGCCCTTA GGCCAGGCTG AGCAAAGAGC
  R
  GAGGCCTAGC TCCAAGGCCA ATAGGCAGGG ATGACCGGCA TATTGCCTGT CTTTCTACAG
  AGGAAGTGTG GGAGAGGCTC AGCTTGGGCA AGAGATTCCC TGCACCCAAG GTCCTTGCAA
  GACACTCCTT ACCTGTTAAG AGAATGAGGG TGTCGTTCCC AGGACCACGT GTGAGCCTTG
  AAGTCAGGTG ACAATGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	NOD/ShiLtJ	PWD/PhJ
ss37212210	NES08446304	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	NOD/ShiLtJ	PWD/PhJ
rs26977578					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212210	NES08446304	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52170595 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	1736 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	233 bp upstream
Tssr107875	transcription start site region 107875	657 bp upstream
Tssr107876	transcription start site region 107876	439 bp downstream
Tssr107877	transcription start site region 107877	471 bp downstream