rs26977579 SNP Detail

Summary

• ID
  rs26977579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52169231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCTTGGC TCCCAGGAGT CCTGCTTAAC CCCTCTCCCC
  TGCTCCCTTA AGGGTTCACT GCATGGCTTT CAGCCTAGAC CTCAACCCAG GAATACAGAC
  R
  GGAGCCTAAT AGTTCGGGCC CCTGCGTGAG TCCTGTGTCT CCCTTCTGGA ACACATAGTC
  AAGTAGCAGA GAGCTGTGGG GACTAGGGAC AGGGAAATGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37212212	NES08446326	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ
rs26977579					SNP	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212212	NES08446326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52169231 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	372 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	1597 bp upstream
Tssr107873	transcription start site region 107873	1240 bp upstream
Tssr107874	transcription start site region 107874	1033 bp upstream
Tssr107875	transcription start site region 107875	667 bp downstream
Tssr107876	transcription start site region 107876	1803 bp downstream
Tssr107877	transcription start site region 107877	1835 bp downstream