rs26977655 SNP Detail

Summary

• ID
  rs26977655
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52116093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTCAGTG GTTAAGGGTG CTTACTGCTC TTGCAGATGA
  CTTGAATTTG GGTCGAAGCA CCTACATCTG GTAGCTTACA ACTGCCTATA ACTCCAGTTT
  S
  AAGGAATCTG ACACCTCTCT GGCTCTCCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCAAATAA ATGTTTGTTT TTTTCTAGGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37212310	NES08447016	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26977655					SNP	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212310	NES08447016	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52116093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2851	CpG island 2851	770 bp distal
Gm73588	predicted gene, 73588	within coordinates
Rr386070	regulatory region 386070	350 bp downstream
Rr386071	regulatory region 386071	1563 bp upstream
Rr446812	regulatory region 446812	628 bp distal
Rr446813	regulatory region 446813	204 bp distal
Tssr3490	transcription start site region 3490	625 bp downstream
Tssr101317	transcription start site region 101317	910 bp downstream
Tssr101318	transcription start site region 101318	583 bp downstream