rs26977656 SNP Detail

Summary

• ID
  rs26977656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52113369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAAAGG CCCCCCTGAT
  TTCTCTCTCT CCTCTCTCTC TCTCTCCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCCCCC
  TTCTCTTTCT GCCGCCCCTC TCTCTCCCAA TATACCTCCC ATGGAACTGT TTGGCCTGCC
  R
  TGGTCCTTCT GAAGCAGCAC AGCGTTCAAG ATCAAACCAG CACCTGGATA GATAGAAAGA
  TTCTGATGCC CCAGAGACCT CCCTCAACAC CCATCAGCTG CTCAGCAGCT GATTGGCTTC
  CTTTGGCTTC CTTTGTGGTG TTTGTTGAAA TGGATTCACA GAGTAAGTCA TTTTACACCT
  AGTGGCTTTC ATTCAACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss37212311	NES08447056	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs26977656					SNP	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37212311	NES08447056	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52113369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2851	CpG island 2851	1593 bp proximal
Rr386070	regulatory region 386070	1097 bp upstream
Rr446807	regulatory region 446807	1789 bp distal
Rr446809	regulatory region 446809	169 bp proximal
Rr446810	regulatory region 446810	273 bp proximal
Rr446811	regulatory region 446811	512 bp proximal
Rr446812	regulatory region 446812	1596 bp proximal
Tssr101317	transcription start site region 101317	1773 bp upstream