rs26978781 SNP Detail

Summary

• ID
  rs26978781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46709021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATAAACT CTAGTCAGGG
  TTGAACCTAT CCTCTCAGGA ACAAAATCTC TTGAGTGTTT GAGATTTGTT GAAGTGAGAT
  GGCTAATTGG TGCCTTAAAA TTTGTAAGAG GAGGGGTTTC ATGATATCCA CTTCTTTCCA
  ACTCATGGTT GCTGTGGAGA GAGACGTTTC TTAGTAGTGT AGCCACTGGG AAGCTGCCCA
  Y
  GCTGCTGTAA ATAGCCCATC ACCTATGCTC CTGTATGCAA CTCTAATTGA CTCAGTGGAG
  CACTCATGCA CACACATACA TATACACCTA AACATACACA ACACACACAC ACACAGACAT
  ACATACATAC ACACACACAG ACACAGACAT ACACACACAT ACACAAACAT ATACATACAC
  AACACACACA CTCAAACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37223213	NES08451165	PERLEGEN	MM_PANEL2	f	SNP	T				T	C	C		T	T	T		C
ss38698144	mCV25344049	ABI	CRAMUS_MOUSE	f	SNP		T	T	C
ss132104562	ENSMUSSNP3400327	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323660828	CHEV_11_46631696	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs26978781					SNP	T	T	T	C	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223213	NES08451165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46709021 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101132	transcription start site region 101132	630 bp downstream
Tssr101133	transcription start site region 101133	604 bp downstream