rs26978782 SNP Detail

Summary

• ID
  rs26978782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCACCC CAGACACTAG
  CCACCACTGC CTTCAGTACA GCAGTGACCA CGTGCCCCTC AACAACACCT GGCTCCTTCT
  CACAAGAAAC CACAAAAGGG TCCGCCTTCA CTACAGGTGA GGATTGTCTG CTGTTTTCCT
  TCTGTTTGTC AGATATGGTG TGGTTTCCTT GAAACAGGAC TCTTCTACAG TGGGCAACCC
  R
  GTGACCTGCA CGTGCGCTCA TGTGTGTGTG TTTCTTTTCC CTTTATGTTT TTGAAAAGTC
  AGCATTTTGG GTTCTCCACT TGACCTCTGA GGAGTCTTGC AGAATCTGTG TGTTGAAGGT
  TATTCTAGGA TAAACTCTAG TCAGGGTTGA ACCTATCCTC TCAGGAACAA AATCTCTTGA
  GTGTTTGAGA TTTGTTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37223214	NES08451164	PERLEGEN	MM_PANEL2	f	SNP	A				G	G	G		A	A	A	A		G
ss38754909	mCV25344038	ABI	CRAMUS_MOUSE	f	SNP		A	A	G		G
ss323660826	CHEV_11_46631369	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26978782					SNP	A	A	A	G	G	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223214	NES08451164	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708694 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101132	transcription start site region 101132	303 bp downstream
Tssr101133	transcription start site region 101133	277 bp downstream