rs26978783 SNP Detail

Summary

• ID
  rs26978783
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCACCCG GCCAACCACC
  ACCCCTTATG TGACCACCAC CACCCCAGAG CTGCTTCCAA CAACAGTCAT GACCACATCT
  GTTCTCCCAA CCACCACACC ACCCCAGACA CTAGCCACCA CTGCCTTCAG TACAGCAGTG
  ACCACGTGCC CCTCAACAAC ACCTGGCTCC TTCTCACAAG AAACCACAAA AGGGTCCGCC
  W
  TCACTACAGG TGAGGATTGT CTGCTGTTTT CCTTCTGTTT GTCAGATATG GTGTGGTTTC
  CTTGAAACAG GACTCTTCTA CAGTGGGCAA CCCGGTGACC TGCACGTGCG CTCATGTGTG
  TGTGTTTCTT TTCCCTTTAT GTTTTTGAAA AGTCAGCATT TTGGGTTCTC CACTTGACCT
  CTGAGGAGTC TTGCAGAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37223215	NES08451163	PERLEGEN	MM_PANEL2	f	SNP	A				T	T	T		T	A		T
ss38817764	mCV25344036	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T		T
ss132104550	ENSMUSSNP5411195	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			T
ss323660824	CHEV_11_46631275	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs26978783					SNP	A	A	A	T	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223215	NES08451163	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708600 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Coding-NonSynonymous
Tssr101132	transcription start site region 101132	209 bp downstream
Tssr101133	transcription start site region 101133	183 bp downstream