rs26978784 SNP Detail

Summary

• ID
  rs26978784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGCAGG GCTAGGTTGT
  TTGTTTGTTT TATTTGATGA ACAAGGAGGA TGGCAGTTGA GTTTTGAGCA GGGCATGGGC
  ACAATTAGAT TTGTAACTTT AATCAGATTT CTGTAGCCAG AGTGTGACAA ATAGACCAGA
  AAGGACAGAA ATGAAAGTGA GAAACTCAGG TGTGGTGAAC AATTCAGGCC AATGAACCAA
  R
  AGAGACCAAC AGAAAGGATG GGAAGGGAAA GATCTTGGAT TTGTTTGTGG TGTATCCCAC
  CCTTATCTCT ACTTGGTGAC CGATGCATCT TCTGTTGGTT ACAGCCACAA CAACCAAAAA
  ACCAACAACA ACCACCCGGC CAACCACCAC CCCTTATGTG ACCACCACCA CCCCAGAGCT
  GCTTCCAACA ACAGTCATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37223216	NES08451162	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26978784					SNP	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223216	NES08451162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708271 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101129	transcription start site region 101129	1902 bp downstream
Tssr101130	transcription start site region 101130	1735 bp downstream
Tssr101131	transcription start site region 101131	1706 bp downstream
Tssr101132	transcription start site region 101132	93 bp upstream
Tssr101133	transcription start site region 101133	128 bp upstream