rs26978785 SNP Detail

Summary

• ID
  rs26978785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGACTG GAAAGACAGA
  GTGCAGGCGG TGTCTTAAAG AGCAATGAGC AGGGCTAGGT TGTTTGTTTG TTTTATTTGA
  TGAACAAGGA GGATGGCAGT TGAGTTTTGA GCAGGGCATG GGCACAATTA GATTTGTAAC
  TTTAATCAGA TTTCTGTAGC CAGAGTGTGA CAAATAGACC AGAAAGGACA GAAATGAAAG
  Y
  GAGAAACTCA GGTGTGGTGA ACAATTCAGG CCAATGAACC AAGAGAGACC AACAGAAAGG
  ATGGGAAGGG AAAGATCTTG GATTTGTTTG TGGTGTATCC CACCCTTATC TCTACTTGGT
  GACCGATGCA TCTTCTGTTG GTTACAGCCA CAACAACCAA AAAACCAACA ACAACCACCC
  GGCCAACCAC CACCCCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37223217	NES08451161	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26978785					SNP	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223217	NES08451161	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708228 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101129	transcription start site region 101129	1859 bp downstream
Tssr101130	transcription start site region 101130	1692 bp downstream
Tssr101131	transcription start site region 101131	1663 bp downstream
Tssr101132	transcription start site region 101132	136 bp upstream
Tssr101133	transcription start site region 101133	171 bp upstream