rs26978786 SNP Detail

Summary

• ID
  rs26978786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAAGAG AGCTCCTTTT
  AGCTGAGATC TGAGAGTTAA GTAAAGGCTA GCCTACAGAA GAGGACCAGC AGTAGAAGTG
  GGGATAGGGT CCAGCAGGTG CAGGAATTGC AGCAGCTGGA AGATCGTGGT ACAGTGAAAG
  AAATAGAGAA AGAAAGATTA AGTGAGGAAA GGGAGAAGGT TCTCTTCCAG CAACATGTGA
  Y
  TGGAAAGACA GAGTGCAGGC GGTGTCTTAA AGAGCAATGA GCAGGGCTAG GTTGTTTGTT
  TGTTTTATTT GATGAACAAG GAGGATGGCA GTTGAGTTTT GAGCAGGGCA TGGGCACAAT
  TAGATTTGTA ACTTTAATCA GATTTCTGTA GCCAGAGTGT GACAAATAGA CCAGAAAGGA
  CAGAAATGAA AGTGAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37223218	NES08451160	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs26978786					SNP	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223218	NES08451160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708035 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101129	transcription start site region 101129	1666 bp downstream
Tssr101130	transcription start site region 101130	1499 bp downstream
Tssr101131	transcription start site region 101131	1470 bp downstream
Tssr101132	transcription start site region 101132	329 bp upstream
Tssr101133	transcription start site region 101133	364 bp upstream