rs26978787 SNP Detail

Summary

• ID
  rs26978787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46707396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTACAAG CAAACGATTT
  TTGATTCCTG GCAGAGGGAG GAGGGTATGC CATTGGGCAC CACCTCTGAC ACTTCTTATG
  CTCTCTTTTT CCATTGCTAT CCTGTGTTTT GGGTAAAATT TGGGTTGTGA AGGGACTCAT
  AAAGATGAGG ATAGAACAGA ACACTTGGAG CTTATGGCTG AAGTGTGTGA ACAATAGGCA
  Y
  CTTTAGGACA TGTCTCAGCC AGAGCTTCTT AGATAGGATT GGACTTTGCC TCTGCATCAG
  CATCTCCTGG GAGATTCTTG GGTCTTAGGA TTGACATAGT GATGTCTTGG AAGGCTTGGT
  CTGGATGGCT GTGTTCTTAG GCTGCCGGCA TGGCTCTCAT GTGTTCTAGA GTTGGAACTA
  GATGCTTTTA ATTAGTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37223219	NES08451201	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	C		C	T	C		C
ss38833275	mCV25344024	ABI	CRAMUS_MOUSE	f	SNP		T	T		C
ss132104538	ENSMUSSNP5987067	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss323660821	CHEV_11_46630071	CHEVERUD	SCREENING_POP	f	SNP							T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26978787					SNP	T	T	T	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223219	NES08451201	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46707396 () rs orientation: forward

Symbol	Name	Function Class
Rr386019	regulatory region 386019	1574 bp downstream
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101129	transcription start site region 101129	1027 bp downstream
Tssr101130	transcription start site region 101130	860 bp downstream
Tssr101131	transcription start site region 101131	831 bp downstream
Tssr101132	transcription start site region 101132	968 bp upstream
Tssr101133	transcription start site region 101133	1003 bp upstream