rs26978791 SNP Detail

Summary

• ID
  rs26978791
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46706762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTCAAG AAGAATGTGC
  GCTTGGAGCT GAGGAGAGGT GAGCCAAGAA CAGGGTTCAA CTCTGAGAAA GAGTCCCGTG
  GTTTGTGGTA ACAGATTCAT GCAGTGGGTT CTGGTGACAA GACTGGGCTT ACCTGAGTAA
  TGGGTAGAAA GGCTGCCTCT CAGATGATGA GCCATAGTGT GGTTAGGGAA ACCCACATAC
  W
  AGTTACAGCT GGAACGACCA CAGAAATGAA TGAGGGATTA TAGCTGATAA AGGAAGAGTC
  AGACTGAAGA TGGAAGGTAC TATTCATCTG AGGGCTTTCC CTTACTTTGC AGAAATTTGG
  CTCAGTGTTT TTGGGCCTCT CAATTTTTAT GGAAACCATA CTGATATCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37223223	NES08451217	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs26978791					SNP	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223223	NES08451217	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46706762 () rs orientation: forward

Symbol	Name	Function Class
Rr386019	regulatory region 386019	940 bp downstream
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101129	transcription start site region 101129	393 bp downstream
Tssr101130	transcription start site region 101130	226 bp downstream
Tssr101131	transcription start site region 101131	197 bp downstream
Tssr101132	transcription start site region 101132	1602 bp upstream
Tssr101133	transcription start site region 101133	1637 bp upstream