rs26978793 SNP Detail

Summary

• ID
  rs26978793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46706503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGACTTT GCCTTGTCAT
  TACCTCTCGT GGTCCCAGAG CCGCAACAGT ATGTGCTGGG GCAAAGGTTC ATGTCCCAAT
  TCCAAGTGCA ATGCAGAGCT TCTCCGTACA GATGGAACAA GAATCATCTC CAGGAAGTCA
  ACAAAATATA CACTTTTGGG GAAGGTCCAG TTTGGTGAAG TGTCCTTGAC CATCTCAAAC
  R
  CCAATCGAGG TGACAGTGGG GTGTACTGCT GCCGTATAGA GGTGCCTGGC TGGTTCAATG
  ATGTCAAGAA GAATGTGCGC TTGGAGCTGA GGAGAGGTGA GCCAAGAACA GGGTTCAACT
  CTGAGAAAGA GTCCCGTGGT TTGTGGTAAC AGATTCATGC AGTGGGTTCT GGTGACAAGA
  CTGGGCTTAC CTGAGTAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37223225	NES08451215	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26978793					SNP	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37223225	NES08451215	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46706503 () rs orientation: forward

Symbol	Name	Function Class
Rr386019	regulatory region 386019	681 bp downstream
Timd4	T cell immunoglobulin and mucin domain containing 4	Coding-NonSynonymous
Tssr101129	transcription start site region 101129	134 bp downstream
Tssr101130	transcription start site region 101130	8 bp upstream
Tssr101131	transcription start site region 101131	41 bp upstream
Tssr101132	transcription start site region 101132	1861 bp upstream
Tssr101133	transcription start site region 101133	1896 bp upstream