rs26980739 SNP Detail

Summary

• ID
  rs26980739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57804812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTTGC AGTGGCTCTC
  CAAGGGTGCT CCTCCAGTGC ACACACCATT TGAGGTTCTA CAAGTGGGGC TGATACAGTG
  GGGTACATAG ATAGGTGCTG TTTTAGAGGG GATGCTGGAC TCTGGCCACT TCTGTTCCTA
  ATGTCCTTTC CCCTCCGCTG TCCCCAGGCA GGAAGCCTCA GCTCCTTACA GTTCAGGTCT
  R
  TGCGTGCTCC AAGCTGGATT GACAACTACT GACCTCGCCC CTTCCTACAG GACAGCCTCT
  TTCTGAAACA GGTTTGGTAA CCACTGAGCC CTACTGTTTT AAGGATTTTT TTTTTAGTGT
  ATATTAATTA TACATTATAA AGAGCTTCAT TATGATGTTT TCAAACTTGC ACATAACATA
  TTTTGAGTCC TCAGACTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37198082	NES08432426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26980739					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198082	NES08432426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57804812 () rs orientation: forward

Symbol	Name	Function Class
D11Mit143	DNA segment, Chr 11, Massachusetts Institute of Technology 143	751 bp proximal
Gm33078	predicted gene, 33078	within coordinates
Gm73794	predicted gene, 73794	396 bp downstream
Rr234828	regulatory region 234828	612 bp distal
Rr244433	regulatory region 244433	1703 bp distal
Rr250602	regulatory region 250602	within coordinates
Rr250603	regulatory region 250603	1190 bp proximal