rs26980745 SNP Detail

Summary

• ID
  rs26980745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57804276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCA CTAGCTTTTC AGGTCCGTGG
  Y
  AGAGAGGCAA GCGATAAGAG GAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37198088	NES08432420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T	T	T		C	T	T	T
ss38731828	mCV23857693	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss323686473	CHEV_11_57726952	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26980745					SNP	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198088	NES08432420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57804276 () rs orientation: forward

Symbol	Name	Function Class
D11Mit143	DNA segment, Chr 11, Massachusetts Institute of Technology 143	1287 bp proximal
Gm33078	predicted gene, 33078	within coordinates
Gm73794	predicted gene, 73794	932 bp downstream
Rr234828	regulatory region 234828	76 bp distal
Rr244432	regulatory region 244432	1504 bp distal
Rr244433	regulatory region 244433	1167 bp distal
Rr250602	regulatory region 250602	within coordinates
Rr250603	regulatory region 250603	1726 bp proximal