rs26980746 SNP Detail

Summary

• ID
  rs26980746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57803989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC GCCTGCATCA TTTTTCTTGC ACTAGGTGTG TTCTCAACAT TTAGTGACAG
  TCTCTGCAGC TCCTAGCCCT AAGCTCACAG CGGCACCTCC TCTCCCTAGG AAACGTGCTG
  CTGTAGAGGT CCTCATCTTC CTGCAGCCCT GCCCTGGAAC GCTGTGGTAT GTCCCTGCCC
  M
  GGGAAAACTG TGACCCTCAA ACCACTTTCC TGCCCAGCAG GGTGGGATGT CACTATGATG
  AGTCAGCTCA TGCCCGAGAT AGCATCTGTA CACCTCCTCC AGCTAGGGGC GCAGGTGAGG
  CCAACACTGG AGTGGGAGGG TTTGGGACGC AGGGGAGCCT TCCCCTGGGC TGGGAGAGGG
  GGAGATGGGA GAATGTCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37198089	NES08432419	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26980746					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198089	NES08432419	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57803989 () rs orientation: forward

Symbol	Name	Function Class
D11Mit143	DNA segment, Chr 11, Massachusetts Institute of Technology 143	1574 bp proximal
Gm33078	predicted gene, 33078	within coordinates
Gm73794	predicted gene, 73794	1219 bp downstream
Rr234828	regulatory region 234828	12 bp proximal
Rr244432	regulatory region 244432	1217 bp distal
Rr244433	regulatory region 244433	880 bp distal
Rr250602	regulatory region 250602	within coordinates