rs26980900 SNP Detail

Summary

• ID
  rs26980900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCG AGCTCCCCAG TCCACACTGC
  Y
  GTGTCTAGGC CTGAGCCTAC CAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37198244	NES08433980	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C		T		C		C	T
ss38845064	mCV23860866	ABI	CRAMUS_MOUSE	f	SNP		C	C			T		C
ss132181276	ENSMUSSNP6929208	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss323685762	CHEV_11_57643940	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs26980900					SNP	C	C	C	T	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198244	NES08433980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	696 bp distal
Cpgi2912	CpG island 2912	797 bp proximal
Gm32915	predicted gene, 32915	1670 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447812	regulatory region 447812	1921 bp distal
Rr447813	regulatory region 447813	954 bp distal
Rr447814	regulatory region 447814	within coordinates
Rr447815	regulatory region 447815	1699 bp proximal
Tssr3506	transcription start site region 3506	1167 bp upstream
Tssr101646	transcription start site region 101646	1248 bp upstream
Tssr101647	transcription start site region 101647	1256 bp upstream
Tssr101648	transcription start site region 101648	1269 bp upstream
Tssr108123	transcription start site region 108123	1475 bp upstream
Tssr108124	transcription start site region 108124	1418 bp upstream
Tssr108125	transcription start site region 108125	1373 bp upstream
Tssr108126	transcription start site region 108126	1192 bp upstream
Tssr108127	transcription start site region 108127	1125 bp upstream
Tssr108128	transcription start site region 108128	1113 bp upstream
Tssr108129	transcription start site region 108129	978 bp upstream
Tssr108130	transcription start site region 108130	1325 bp downstream
Tssr108131	transcription start site region 108131	1566 bp downstream
Tssr108132	transcription start site region 108132	1646 bp downstream
Tssr108133	transcription start site region 108133	1704 bp downstream