rs26980901 SNP Detail

Summary

• ID
  rs26980901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG GCCGCCACAG TCTGGGCCCA
  K
  CTCTCTAGCA GGAACCCAGT GCGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37198245	NES08433975	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G		T		G		T	T	G
ss38808888	mCV23861136	ABI	CRAMUS_MOUSE	f	SNP		G	G			T		G
ss132181268	ENSMUSSNP5556036	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss323685760	CHEV_11_57643701	CHEVERUD	SCREENING_POP	f	SNP										T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs26980901					SNP	G	G	G	G	G	T	T	G	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198245	NES08433975	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	1839 bp distal
Cpgi2911	CpG island 2911	457 bp distal
Cpgi2912	CpG island 2912	1036 bp proximal
Gm32915	predicted gene, 32915	1909 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447812	regulatory region 447812	1682 bp distal
Rr447813	regulatory region 447813	715 bp distal
Rr447814	regulatory region 447814	within coordinates
Rr447815	regulatory region 447815	1938 bp proximal
Tssr3506	transcription start site region 3506	928 bp upstream
Tssr101646	transcription start site region 101646	1487 bp upstream
Tssr101647	transcription start site region 101647	1495 bp upstream
Tssr101648	transcription start site region 101648	1508 bp upstream
Tssr108123	transcription start site region 108123	1236 bp upstream
Tssr108124	transcription start site region 108124	1179 bp upstream
Tssr108125	transcription start site region 108125	1134 bp upstream
Tssr108126	transcription start site region 108126	953 bp upstream
Tssr108127	transcription start site region 108127	886 bp upstream
Tssr108128	transcription start site region 108128	874 bp upstream
Tssr108129	transcription start site region 108129	739 bp upstream
Tssr108130	transcription start site region 108130	1564 bp downstream
Tssr108131	transcription start site region 108131	1805 bp downstream
Tssr108132	transcription start site region 108132	1885 bp downstream
Tssr108133	transcription start site region 108133	1943 bp downstream