rs26980904 SNP Detail

Summary

• ID
  rs26980904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57720371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTG CGTCCTTTCC TCTCCTCTCC
  R
  CGTAGCCAGG TGGGCCAGCC TCGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37198248	NES08433972	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		A	G	G		G	G	G	G
ss38737363	mCV23861138	ABI	CRAMUS_MOUSE	f	SNP		G	G				A		G
ss132181260	ENSMUSSNP156606	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss323685758	CHEV_11_57643047	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26980904					SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198248	NES08433972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57720371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	1185 bp distal
Cpgi2911	CpG island 2911	within coordinates
Cpgi2912	CpG island 2912	1690 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447811	regulatory region 447811	1788 bp distal
Rr447812	regulatory region 447812	1028 bp distal
Rr447813	regulatory region 447813	61 bp distal
Rr447814	regulatory region 447814	within coordinates
Tssr3506	transcription start site region 3506	274 bp upstream
Tssr108123	transcription start site region 108123	582 bp upstream
Tssr108124	transcription start site region 108124	525 bp upstream
Tssr108125	transcription start site region 108125	480 bp upstream
Tssr108126	transcription start site region 108126	299 bp upstream
Tssr108127	transcription start site region 108127	232 bp upstream
Tssr108128	transcription start site region 108128	220 bp upstream
Tssr108129	transcription start site region 108129	85 bp upstream