rs26980905 SNP Detail

Summary

• ID
  rs26980905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57720315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC TCCGCAGAGA CTGGGCGAAA
  Y
  GCGCGCGGGC ACCGGGAGAC CCGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37198249	NES08433971	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	T		T	T	T	T		T
ss38786085	mCV23861148	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss132181256	ENSMUSSNP4743330	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss323685757	CHEV_11_57642991	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26980905					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198249	NES08433971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57720315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	1129 bp distal
Cpgi2911	CpG island 2911	within coordinates
Cpgi2912	CpG island 2912	1746 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447811	regulatory region 447811	1732 bp distal
Rr447812	regulatory region 447812	972 bp distal
Rr447813	regulatory region 447813	5 bp distal
Rr447814	regulatory region 447814	within coordinates
Tssr3506	transcription start site region 3506	218 bp upstream
Tssr108123	transcription start site region 108123	526 bp upstream
Tssr108124	transcription start site region 108124	469 bp upstream
Tssr108125	transcription start site region 108125	424 bp upstream
Tssr108126	transcription start site region 108126	243 bp upstream
Tssr108127	transcription start site region 108127	176 bp upstream
Tssr108128	transcription start site region 108128	164 bp upstream
Tssr108129	transcription start site region 108129	29 bp upstream