rs26980907 SNP Detail

Summary

• ID
  rs26980907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57718899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGCGCC CTTCCCGCCT
  GGTCCTCAGC AGGAACAGGC CAAGATCTGA GCACGCGCAC TCAATGCCGA GTTCGGGCCG
  CGGCGCCGGT GGACCTGGGA GCCGTTGCCA GACAGGAGGC ACTCGGCTGC GTCCACACGC
  AGGAAACCGA TTGCTGGCAC GCGACCGTTA TTCACCACCG CAGAGATGCC TGTCTTAGCG
  M
  ACCCCGGTTT AGCTCCATAC TCACCCGTAC CCCCAAGCAA ATGCGCCAGC GGTGAACACG
  CAGTTGGGGC CACGGAGGCC GGCTCTGGCC GCATGCATGG GCATCCTACA CCACACATGG
  TCTCATAAGT ATTTAAGTGT TCTGTTGCGA GAGAGAAACC TCAATGTAAC CATTAACATG
  AGGTTATTTA TGTATAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37198252	NES08434004	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	C		A	A	A	A
ss132181212	ENSMUSSNP654881	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26980907					SNP	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198252	NES08434004	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57718899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	within coordinates
Cpgi2911	CpG island 2911	1000 bp proximal
Hand1	heart and neural crest derivatives expressed 1	640 bp downstream
Rr447811	regulatory region 447811	316 bp distal
Rr447812	regulatory region 447812	within coordinates
Rr447813	regulatory region 447813	873 bp proximal
Rr447814	regulatory region 447814	1412 bp proximal
Tssr3506	transcription start site region 3506	1197 bp downstream
Tssr108123	transcription start site region 108123	883 bp downstream
Tssr108124	transcription start site region 108124	944 bp downstream
Tssr108125	transcription start site region 108125	976 bp downstream
Tssr108126	transcription start site region 108126	1162 bp downstream
Tssr108127	transcription start site region 108127	1235 bp downstream
Tssr108128	transcription start site region 108128	1242 bp downstream
Tssr108129	transcription start site region 108129	1373 bp downstream