rs26980908 SNP Detail

Summary

• ID
  rs26980908
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57718814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACC TGGGAGCCGT TGCCAGACAG
  S
  AGGCACTCGG CTGCGTCCAC ACGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37198253	NES08434003	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		G	C	C		C		C	C	C
ss38732404	mCV23861161	ABI	CRAMUS_MOUSE	f	SNP		C	C				G		C
ss132181208	ENSMUSSNP5016875	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				C
ss323685747	CHEV_11_57641490	CHEVERUD	SCREENING_POP	f	SNP											G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs26980908					SNP	C	C	C	C	C	C	G	G	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198253	NES08434003	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57718814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	within coordinates
Cpgi2911	CpG island 2911	1085 bp proximal
Hand1	heart and neural crest derivatives expressed 1	725 bp downstream
Rr447811	regulatory region 447811	231 bp distal
Rr447812	regulatory region 447812	within coordinates
Rr447813	regulatory region 447813	958 bp proximal
Rr447814	regulatory region 447814	1497 bp proximal
Tssr3506	transcription start site region 3506	1282 bp downstream
Tssr108123	transcription start site region 108123	968 bp downstream
Tssr108124	transcription start site region 108124	1029 bp downstream
Tssr108125	transcription start site region 108125	1061 bp downstream
Tssr108126	transcription start site region 108126	1247 bp downstream
Tssr108127	transcription start site region 108127	1320 bp downstream
Tssr108128	transcription start site region 108128	1327 bp downstream
Tssr108129	transcription start site region 108129	1458 bp downstream