rs26980909 SNP Detail

Summary

• ID
  rs26980909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57718247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAAAAG CCTGGCTGTG
  TAGGCTGGGC TGAGGAGGTA CCCAGGCTAG GTACCCTCTC CACCCCGGAC TGTAAGGAAA
  GAGGACGCGG GAGCACATTC TTCCCGAGCT TAGAATGCTT TGCCATGCTA AAAATAGAAA
  TGGGAACGGG ACCCCTAAGA GGGTTGGTGA TCAAGACCTG AACTAGAGTC CTGGGTTCGA
  R
  TCTAAGGAAG GTTTGCTCCC TCGCTCCATT TCCTAAGGCA GGCCAGAATT TCCAAAAGGG
  AAAGAAAAAT CATAACGAGC CTCGGGTTTC CTTTCTGCTT GTCCCGTAGG GGCCTCGGAG
  GCCGGGGGAG GGGCGCGCCG GGCGGCTCAT TACGACGAGG TGTTGGTCTA GTTAAAGCGC
  GGGCTTGTTT GATCTGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37198254	NES08434002	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	G	G	G	G	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26980909					SNP	G	G	A	A	A	G	G	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198254	NES08434002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57718247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	109 bp proximal
Cpgi2911	CpG island 2911	1652 bp proximal
Hand1	heart and neural crest derivatives expressed 1	1292 bp downstream
Rr447809	regulatory region 447809	1973 bp distal
Rr447810	regulatory region 447810	1798 bp distal
Rr447811	regulatory region 447811	within coordinates
Rr447812	regulatory region 447812	499 bp proximal
Rr447813	regulatory region 447813	1525 bp proximal
Tssr3506	transcription start site region 3506	1849 bp downstream
Tssr108123	transcription start site region 108123	1535 bp downstream
Tssr108124	transcription start site region 108124	1596 bp downstream
Tssr108125	transcription start site region 108125	1628 bp downstream
Tssr108126	transcription start site region 108126	1814 bp downstream
Tssr108127	transcription start site region 108127	1887 bp downstream
Tssr108128	transcription start site region 108128	1894 bp downstream