rs26980910 SNP Detail

Summary

• ID
  rs26980910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57718155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAATGG GACCATAGGC
  AACTGAGGTT ACATTTAGGG GTCTAGTCCT CTCAGCCTAA AGAAAGGTTG GGGGCAGCTG
  GACCCGGGTG TCCCTGGAAA AGCCTGGCTG TGTAGGCTGG GCTGAGGAGG TACCCAGGCT
  AGGTACCCTC TCCACCCCGG ACTGTAAGGA AAGAGGACGC GGGAGCACAT TCTTCCCGAG
  Y
  TTAGAATGCT TTGCCATGCT AAAAATAGAA ATGGGAACGG GACCCCTAAG AGGGTTGGTG
  ATCAAGACCT GAACTAGAGT CCTGGGTTCG AGTCTAAGGA AGGTTTGCTC CCTCGCTCCA
  TTTCCTAAGG CAGGCCAGAA TTTCCAAAAG GGAAAGAAAA ATCATAACGA GCCTCGGGTT
  TCCTTTCTGC TTGTCCCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37198255	NES08434001	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26980910					SNP	C	C	T	T	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37198255	NES08434001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57718155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	201 bp proximal
Cpgi2911	CpG island 2911	1744 bp proximal
Hand1	heart and neural crest derivatives expressed 1	1384 bp downstream
Rr447809	regulatory region 447809	1881 bp distal
Rr447810	regulatory region 447810	1706 bp distal
Rr447811	regulatory region 447811	within coordinates
Rr447812	regulatory region 447812	591 bp proximal
Rr447813	regulatory region 447813	1617 bp proximal
Tssr3506	transcription start site region 3506	1941 bp downstream
Tssr108123	transcription start site region 108123	1627 bp downstream
Tssr108124	transcription start site region 108124	1688 bp downstream
Tssr108125	transcription start site region 108125	1720 bp downstream
Tssr108126	transcription start site region 108126	1906 bp downstream
Tssr108127	transcription start site region 108127	1979 bp downstream
Tssr108128	transcription start site region 108128	1986 bp downstream