rs26981441 SNP Detail

Summary

• ID
  rs26981441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85061685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTCCGGA ATAACTGCGG AGTGGTGTCC ATCCAGGAAA
  ATTACTTCAG AAACTTTACC GAGGTTTAAA ATCAATAGCT TCTGGCCAGA GGTGTGCCAT
  Y
  TGGTCCTAGT CAGCTGTAAG CACTGACACA CAACCCCCCC AAAAAAAAGT GGGGTGGGGG
  GGACAGCACA CGTGGCTCAC TGACTTACCT AGTCCAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233182	NES08595195	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	T	T	C	T	T	C	T
ss38797016	mCV24662613	ABI	CRAMUS_MOUSE	f	SNP		T	T					T	C
ss132490465	ENSMUSSNP5956603	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981441					SNP	T	T	T	C	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233182	NES08595195	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85061685 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	within coordinates
Cpgi3451	CpG island 3451	477 bp distal
Gm73307	predicted gene, 73307	within coordinates
Rr453329	regulatory region 453329	445 bp distal
Rr453330	regulatory region 453330	620 bp distal
Rr453331	regulatory region 453331	155 bp distal
Tssr3620	transcription start site region 3620	209 bp upstream
Tssr103818	transcription start site region 103818	215 bp upstream
Tssr103819	transcription start site region 103819	238 bp upstream