rs26981445 SNP Detail

Summary

• ID
  rs26981445
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:85061211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCAGCCGG AACCATGCCT GCAGCTCAAG ACACTGCTGA
  TAAGTGTTTG CTCGGTCGCC CCGGCCTCCC GCTGGCATGC TGGAGAAGCC AGAGCACTCC
  R
  AATCCAACCA AAAGCCTTAC TTCTGTTTCA GTGGCCACTG ACTTAAGGCA AGTGATAGGA
  CCTCGGCTAC CCAGGCTCAT TATGAAACAG GGTCACTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233186	NES08595191	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981445					SNP	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233186	NES08595191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85061211 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chct1	CHD1 helical C-terminal domain containing 1			Intron
				mRNA-UTR
Cpgi3451	CpG island 3451			3 bp distal
Gm73307	predicted gene, 73307			within coordinates
Rr453329	regulatory region 453329			within coordinates
Rr453330	regulatory region 453330			146 bp distal
Rr453331	regulatory region 453331			30 bp proximal
Tssr3620	transcription start site region 3620			683 bp upstream
Tssr103818	transcription start site region 103818			689 bp upstream
Tssr103819	transcription start site region 103819			712 bp upstream