rs26981447 SNP Detail

Summary

• ID
  rs26981447
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85061166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAAACA TGGCTTAAAT
  GGATAAACTG CAGCTGCAAC GGTCTTTTAC ACCGGGCAAC TCGCTACGCT AGCTGGGGAA
  AGACACGAGG GGGCGCTGGT GCCCTGCTAG GGACAAAGCT TGTCCTGACC GAGCGGCTGA
  GCACCCATCA GCCGGAACCA TGCCTGCAGC TCAAGACACT GCTGATAAGT GTTTGCTCGG
  W
  CGCCCCGGCC TCCCGCTGGC ATGCTGGAGA AGCCAGAGCA CTCCGAATCC AACCAAAAGC
  CTTACTTCTG TTTCAGTGGC CACTGACTTA AGGCAAGTGA TAGGACCTCG GCTACCCAGG
  CTCATTATGA AACAGGGTCA CTACTTGGCA CCTACTCCCA GGAAGGTTTT GGTGAGATTA
  ATGAAATACA TGCCAGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233188	NES08595189	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981447					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233188	NES08595189	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85061166 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	64 bp upstream
Cpgi3451	CpG island 3451	within coordinates
Gm73307	predicted gene, 73307	within coordinates
Rr453329	regulatory region 453329	within coordinates
Rr453330	regulatory region 453330	101 bp distal
Rr453331	regulatory region 453331	75 bp proximal
Tssr3620	transcription start site region 3620	728 bp upstream
Tssr103818	transcription start site region 103818	734 bp upstream
Tssr103819	transcription start site region 103819	757 bp upstream