rs26981453 SNP Detail

Summary

• ID
  rs26981453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:85060663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGTGACA TCTTCAGAAT
  GCCACTATTG TCAATTTTTT TCTCCTTAAG GCTCTCCCCA GGATGGACAG AGGTAATGCA
  TGTTCTACAT TTTCAAACAC ATTGTTTACT GACAATTTTA TAGAGTGTCT AGGAGGCTTT
  CTTTTGCCTT CCTCTTACCA ACATGGTTGT CCTTAGCTGT GAAATAATCC TCAGGGAGCA
  R
  GTCTTCCAAA GTGAAGCAGA GAAGTAGGGA CTTTGATTGT CCCCATCTCC TCTCCACAAT
  TTGCTAAACA TAATAGTACA GAGAATAGTT TATTTCTGGA CAGAAAAGGA ACTCGCCCCA
  AACCCCAGGG TCTCCTGGCC TGTCCAGCCT TGGAGCTGGT AAGAGCTGCC ATGTCCTGAC
  CTGTGAGGCT AGATGGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233194	NES08595183	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981453					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233194	NES08595183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85060663 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	Intron
Cpgi3451	CpG island 3451	267 bp proximal
Gm73307	predicted gene, 73307	within coordinates
Rr453329	regulatory region 453329	108 bp proximal
Rr453330	regulatory region 453330	381 bp proximal
Rr453331	regulatory region 453331	578 bp proximal
Tssr3620	transcription start site region 3620	1231 bp upstream
Tssr103818	transcription start site region 103818	1237 bp upstream
Tssr103819	transcription start site region 103819	1260 bp upstream