rs26981456 SNP Detail

Summary

• ID
  rs26981456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85060542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGACATAAC ATTTTATTTA TCCTAGTGAC ATCTTCAGAA
  TGCCACTATT GTCAATTTTT TTCTCCTTAA GGCTCTCCCC AGGATGGACA GAGGTAATGC
  R
  TGTTCTACAT TTTCAAACAC ATTGTTTACT GACAATTTTA TAGAGTGTCT AGGAGGCTTT
  CTTTTGCCTT CCTCTTACCA ACATGGTTGT CCTTAGCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233197	NES08595180	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	G	A	A	G	A	A	G	A
ss38799126	mCV24662576	ABI	CRAMUS_MOUSE	f	SNP		A	A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981456					SNP	A	A	A	G	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233197	NES08595180	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85060542 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	688 bp upstream
Cpgi3451	CpG island 3451	388 bp proximal
Gm73307	predicted gene, 73307	within coordinates
Rr453329	regulatory region 453329	229 bp proximal
Rr453330	regulatory region 453330	502 bp proximal
Rr453331	regulatory region 453331	699 bp proximal
Tssr3620	transcription start site region 3620	1352 bp upstream
Tssr103818	transcription start site region 103818	1358 bp upstream
Tssr103819	transcription start site region 103819	1381 bp upstream