rs26981457 SNP Detail

Summary

• ID
  rs26981457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85060474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACATGCTGC TGCTCTCAGC TCAGGAGCTT TAGGCGTAGA
  ATAGCACTTG GACACGGGGG ACAGATATGT GACATAACAT TTTATTTATC CTAGTGACAT
  Y
  TTCAGAATGC CACTATTGTC AATTTTTTTC TCCTTAAGGC TCTCCCCAGG ATGGACAGAG
  GTAATGCATG TTCTACATTT TCAAACACAT TGTTTACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233198	NES08595179	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	T	C	C	T	C	C	T	C
ss38660922	mCV24662575	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981457					SNP	C	C	C	T	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233198	NES08595179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85060474 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	756 bp upstream
Cpgi3451	CpG island 3451	456 bp proximal
Gm73307	predicted gene, 73307	within coordinates
Rr453329	regulatory region 453329	297 bp proximal
Rr453330	regulatory region 453330	570 bp proximal
Rr453331	regulatory region 453331	767 bp proximal
Tssr3620	transcription start site region 3620	1420 bp upstream
Tssr103818	transcription start site region 103818	1426 bp upstream
Tssr103819	transcription start site region 103819	1449 bp upstream