rs26981460 SNP Detail

Summary

• ID
  rs26981460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:85059827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGACTTA CTGGAGGCTT
  TTGGAGTGAA AGGGGTTGGA GAAGAGAGTG AATGAAGAGA CCAGAATAGC TAAGCCTTTT
  GTTTTTAAAA CATCTGTTTC TTTTTCAAAT GTAGGTGTGT GTATATACAA GTAATATACA
  CATGTATGTG TTTATTCAAA TCTTTTTAAA ATTTTTTTCA GTGTTATTTC ATATCTCATG
  Y
  CACTTTTGGA TGATGTATGT GACAATTTTG GGGGTTTGGG GTTTTGTTTG TTTGTTTGTT
  TATTTGTTGA GACAGAATAT CCATGTAGTC TGGGTGACTA AAACTGAATC TGTACTGACA
  ATAGGCCAGG CTGGACTTGA ACTTGTAATA GTCTTCTCCC TTCTCCAGAA TGCTGAGATT
  ACAGGCATGT GCGTCTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233201	NES08595200	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981460					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233201	NES08595200	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85059827 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	Intron
Cpgi3451	CpG island 3451	1103 bp proximal
Gm73307	predicted gene, 73307	614 bp downstream
Rr453329	regulatory region 453329	944 bp proximal
Rr453330	regulatory region 453330	1217 bp proximal
Rr453331	regulatory region 453331	1414 bp proximal