rs26981463 SNP Detail

Summary

• ID
  rs26981463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85059593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGAAAT ATATGTTGCA
  ATGAATAACA CTGTTAGATG AGTTAACTTG CCCTACAGAA AAATTTTATT CTGACCAATT
  GAATTTTGAA TGTTTCCCAA AAGCAATGGA TTTGTGTTTG GTTTTACTTA CAGTTGTATT
  TGAGCCACTT CTCTGGCTGT TATCAATTGT CGGTTCAGGC TACTCCCCAG GCTTGAGAGT
  R
  AGCCATCATG TAAATAGGGC AGCCATGCAG AGCTTGGGAC TTACTGGAGG CTTTTGGAGT
  GAAAGGGGTT GGAGAAGAGA GTGAATGAAG AGACCAGAAT AGCTAAGCCT TTTGTTTTTA
  AAACATCTGT TTCTTTTTCA AATGTAGGTG TGTGTATATA CAAGTAATAT ACACATGTAT
  GTGTTTATTC AAATCTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37233204	NES08595197	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26981463					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37233204	NES08595197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85059593 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	1637 bp upstream
Cpgi3451	CpG island 3451	1337 bp proximal
Gm73307	predicted gene, 73307	848 bp downstream
Rr453329	regulatory region 453329	1178 bp proximal
Rr453330	regulatory region 453330	1451 bp proximal
Rr453331	regulatory region 453331	1648 bp proximal