rs26982231 SNP Detail

Summary

• ID
  rs26982231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88432503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGACTC AAGAGCAACT
  CAGAGGATGG ATCTGGAGAA CTGCAGAATA CGGTACCCAG AGCTGAAGCG GGGCTTAGGG
  CTGGGGATGA GGGGGGCAGT GGTTGGAAAC CATGTCTCAG TGGTCCGGTG GAGTGTGGCT
  TCCACAGGCT CTCTACATAA TTCTGCCCAG AAAGATGGTG AGCATGGTAG GAGTGGCCAG
  Y
  GTGGCATGCA TGACAACTCA AGGCCTTCAG AACAGGGCAC TGTCATCCTC CTTTCCCCTC
  TCCATCCGGA CAGTGGAATG AATGCCAGTC AAGGCATAAG GCTATGTAAG AAAAGATGAT
  GCCCCAGTCC TAACTCCAAG AGCCTTGGCT GATTCAAGTA TGTTCTCTTG CCAAGGATAC
  TTAAATGGTT GCAAATGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37226074	NES08584302	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26982231					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37226074	NES08584302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88432503 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	1209 bp upstream
Tssr110018	transcription start site region 110018	31 bp upstream