rs26982234 SNP Detail

Summary

• ID
  rs26982234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88431498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGTTTA CAGGGTCCCT
  TATTAGAGAT GTGGGTGGAG CCACTGGGCT TTTGGCAGCT GCCTCAGGGG CAGGAGCAAG
  GAGAAAAATC ACATCTGGAG AGGAGTCTTC ATTGAATCTA GAGGTTCTCA ATCAAAGACC
  ACAGATATTC TTAGACATGA TGAATCCAAG GTCTCCTGAC GCTAATTCCA ACCTTACTGT
  Y
  TGGACCAGTG GGTTCTCAAC CTGTGGGTCT TAACTCCTCT GAAAACCTCT ATCTCCAAAA
  ATATTTACAC TATGATTCTT GACCTTAACA AAATTACAGT TGTGAAGTAA AAACAAAACT
  TATGGGGGGG GGGTTGGGAG TCATTACAAC ATGAGGAACT ATATCAACGC GGCATTAGGA
  AGGTTGAGGA CCACTAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37226077	NES08584333	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26982234					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37226077	NES08584333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88431498 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Rr454129	regulatory region 454129	81 bp distal
Rr454130	regulatory region 454130	1326 bp proximal
Tssr110017	transcription start site region 110017	204 bp upstream
Tssr110018	transcription start site region 110018	963 bp downstream