rs26982236 SNP Detail

Summary

• ID
  rs26982236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88431408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCTCCTG TGGCCTGCAC
  AGGGAGCATC TTGCACTCCA AACCTGGCTC AAAACACGGC ATCCATAGCA ATTAGCAATC
  CAATTACTCT CTGGAGTTTA CAGGGTCCCT TATTAGAGAT GTGGGTGGAG CCACTGGGCT
  TTTGGCAGCT GCCTCAGGGG CAGGAGCAAG GAGAAAAATC ACATCTGGAG AGGAGTCTTC
  R
  TTGAATCTAG AGGTTCTCAA TCAAAGACCA CAGATATTCT TAGACATGAT GAATCCAAGG
  TCTCCTGACG CTAATTCCAA CCTTACTGTC TGGACCAGTG GGTTCTCAAC CTGTGGGTCT
  TAACTCCTCT GAAAACCTCT ATCTCCAAAA ATATTTACAC TATGATTCTT GACCTTAACA
  AAATTACAGT TGTGAAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37226079	NES08584331	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26982236					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37226079	NES08584331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88431408 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	114 bp upstream
Tssr110018	transcription start site region 110018	1053 bp downstream