rs26982238 SNP Detail

Summary

• ID
  rs26982238
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88431100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA CTGAGACTGG ACTCAAATCC
  K
  CCAGTGGCCC TTAAAGGGGC TGCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37226081	NES08584329	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	T	T		G		T	T		T
ss38756112	mCV23128068	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				G	T
ss132535232	ENSMUSSNP5043294	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T					G
ss323779783	CHEV_11_88353776	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26982238					SNP	T	T	T	T	T	T	G	T	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37226081	NES08584329	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88431100 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	179 bp downstream
Tssr110018	transcription start site region 110018	1361 bp downstream