rs26982842 SNP Detail

Summary

• ID
  rs26982842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62022988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGAGATG TTGGGAAGGT
  ACTGTTACAC TCTCCAGCCA GCTTTTCCCA GAACATCTCC AACATACATT TTTTTTTTTC
  TGGCAGGAAA TGAAACTAAA GCAATCATTC AATTTTTAGT TACAAAGAAC TCTTTGCCAT
  CAAGGAGTTA CCTCTTGTGT CTCTTTCAAG TAGTGAGGCA CCATTAAAGC CAAGTCTTTC
  Y
  GCTTAAGCTT CCTAATGACT GATTCTTCAG GAACTAAGCT TCAGAAACCC CTACATAGAG
  ACCCCAGCAC ACTTACCTAG TGTCTGAGGT AACGTGGAGT CTGTCCTTTT CAGGAGGAAA
  CAGAAGAATG GAGGCGATTC CAGGCAGACT TACAGACTGC AGTGGTAGTG GCCAACGACA
  TCAAGTGTGA GGCTCAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37188371	NES08417741	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26982842					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37188371	NES08417741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62022988 () rs orientation: forward

Symbol	Name	Function Class
Gm39985	predicted gene, 39985	within coordinates
Rr448793	regulatory region 448793	1593 bp distal
Specc1	sperm antigen with calponin homology and coiled-coil domains 1	within coordinates
Tssr101998	transcription start site region 101998	1074 bp downstream