rs26982853 SNP Detail

Summary

• ID
  rs26982853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62020938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TATTGCAAAA AGTAGAGAGG
  R
  AAAAAAAAGG CATCCTGATG CATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37188382	NES08417750	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G			A		A	A		A
ss38719828	mCV23331892	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	A
ss132281296	ENSMUSSNP1944720	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss323703071	CHEV_11_61943614	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26982853					SNP	A	A	G	A	G	A	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37188382	NES08417750	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62020938 () rs orientation: forward

Symbol	Name	Function Class
Gm39985	predicted gene, 39985	within coordinates
Rr448791	regulatory region 448791	1961 bp distal
Rr448793	regulatory region 448793	81 bp proximal
Specc1	sperm antigen with calponin homology and coiled-coil domains 1	within coordinates
Tssr101998	transcription start site region 101998	972 bp upstream