rs26984584 SNP Detail

Summary

• ID
  rs26984584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62496061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGCTGC AGTGCCATGC
  AAAGACGCCA TCTTGTTTGC TTACCTGGCC TGTAAGGCTG TTCTTCCCCA TAACCCCATG
  AGTTCAGACT TTGACCACTT AATTCAGAAC AGTTCTCTTG GGCTTGAGTT GGGGACTAGG
  AGTGTTTAAG GGTGTTAGGA ACACCCAGTT TTCCCTCTTT GCTAAGTAGG ACTGGTTCTA
  R
  AGGTGAGTTT TTGAAAAGCC AATACAGGGA CTAGATTATG GGAGGACCTG GTAGAAAAAG
  TTGTGCTGGT TGGTGGATAA GGGAGCTAGG CCCTATATAG ATAAGATTGC CTAAAAGGTC
  TGCAGCTTAA ACTGGATTTT CCACACTTGG TATTCTGAAA CTTACTGCCT TTAAGAAGGC
  CTTGGGAAGT AGGCAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37187306	NES08410404	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26984584					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187306	NES08410404	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62496061 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	429 bp downstream
Cpgi3027	CpG island 3027	1732 bp distal
Lrrc75a	leucine rich repeat containing 75A	within coordinates
Lrrc75aos2	leucine rich repeat containing 75A, opposite strand 2	495 bp upstream
Rr235283	regulatory region 235283	1140 bp proximal
Rr246930	regulatory region 246930	within coordinates
Snord49a	small nucleolar RNA, C/D box 49A	1714 bp downstream
Snord65	small nucleolar RNA, C/D box 65	649 bp downstream
Tssr102053	transcription start site region 102053	1778 bp downstream
Tssr102054	transcription start site region 102054	493 bp upstream