rs26984586 SNP Detail

Summary

• ID
  rs26984586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62495721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCCTAAG TGACATGTCT
  GCCAATTTTG TTCTGGGTGG GCACATTTGG TAATCCTGTC TGTACCACAG GATCTTCTAT
  GCCTTTTAAA AATAAACATT TGTTTATAAA CCAGATTGCC AGTGTTTTGG ATGAATTAAG
  TTGTGTGTAC AGCTAACCAT CAAAGCACTC TAATAAAGCA CAGTCCGTAT TGGTCCTTGA
  R
  AACATGTATT AGAGTAGAGT GTCAGGTGTT AGGCAGTCCA GCTTCAGCAC TGTAAACTTC
  TGGGCAGTCT CAGCTGTTTG CACAGCTGGA CTTGGGCAAA GATTCCAAAG CATTTAAGGC
  ACCCACACTC AATCCCTGTT CTTGGCTGCA GTGCCATGCA AAGACGCCAT CTTGTTTGCT
  TACCTGGCCT GTAAGGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37187309	NES08410401	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26984586					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187309	NES08410401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62495721 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	89 bp downstream
Cpgi3027	CpG island 3027	1392 bp distal
Lrrc75a	leucine rich repeat containing 75A	within coordinates
Lrrc75aos2	leucine rich repeat containing 75A, opposite strand 2	835 bp upstream
Rr235283	regulatory region 235283	1480 bp proximal
Rr246930	regulatory region 246930	within coordinates
Snord49a	small nucleolar RNA, C/D box 49A	1374 bp downstream
Snord49b	small nucleolar RNA, C/D box 49B	1747 bp downstream
Snord65	small nucleolar RNA, C/D box 65	309 bp downstream
Tssr102049	transcription start site region 102049	1904 bp downstream
Tssr102050	transcription start site region 102050	1817 bp downstream
Tssr102051	transcription start site region 102051	1729 bp downstream
Tssr102052	transcription start site region 102052	1703 bp downstream
Tssr102053	transcription start site region 102053	1438 bp downstream
Tssr102054	transcription start site region 102054	833 bp upstream