rs26984587 SNP Detail

Summary

• ID
  rs26984587
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62495661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTCAGC TCTTTTGCAG
  GCTATATTCC CAGAGGAGTC TCCAGCCGGC CTGAAAGCAA ATATCCTAAG TGACATGTCT
  GCCAATTTTG TTCTGGGTGG GCACATTTGG TAATCCTGTC TGTACCACAG GATCTTCTAT
  GCCTTTTAAA AATAAACATT TGTTTATAAA CCAGATTGCC AGTGTTTTGG ATGAATTAAG
  W
  TGTGTGTACA GCTAACCATC AAAGCACTCT AATAAAGCAC AGTCCGTATT GGTCCTTGAA
  AACATGTATT AGAGTAGAGT GTCAGGTGTT AGGCAGTCCA GCTTCAGCAC TGTAAACTTC
  TGGGCAGTCT CAGCTGTTTG CACAGCTGGA CTTGGGCAAA GATTCCAAAG CATTTAAGGC
  ACCCACACTC AATCCCTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37187310	NES08410399	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26984587					SNP	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187310	NES08410399	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62495661 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	29 bp downstream
Cpgi3027	CpG island 3027	1332 bp distal
Lrrc75a	leucine rich repeat containing 75A	49 bp downstream
Lrrc75aos2	leucine rich repeat containing 75A, opposite strand 2	895 bp upstream
Rr235283	regulatory region 235283	1540 bp proximal
Rr246930	regulatory region 246930	within coordinates
Rr402627	regulatory region 402627	1947 bp downstream
Snord49a	small nucleolar RNA, C/D box 49A	1314 bp downstream
Snord49b	small nucleolar RNA, C/D box 49B	1687 bp downstream
Snord65	small nucleolar RNA, C/D box 65	249 bp downstream
Tssr102048	transcription start site region 102048	1949 bp downstream
Tssr102049	transcription start site region 102049	1844 bp downstream
Tssr102050	transcription start site region 102050	1757 bp downstream
Tssr102051	transcription start site region 102051	1669 bp downstream
Tssr102052	transcription start site region 102052	1643 bp downstream
Tssr102053	transcription start site region 102053	1378 bp downstream
Tssr102054	transcription start site region 102054	893 bp upstream