rs26984590 SNP Detail

Summary

• ID
  rs26984590
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62493740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTGGGGT GAGGAGTGGT CTATTCCTAG CCCTTAAGAG
  GAGGGCGCTC ACGCGCCGTC TTTCTCTGCG GCCATCATGG GATCGTGCTC TTCTCGCTCG
  K
  TGAGCTGGTC CCTTCGCCGT GGCCTGCTGG TGACGGTCTG GAGCGATGCT GAGCCCGGGC
  CCAGCCTCTC AGCTCCGCCT TGTGCGCTGC ACAGATCTAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37187313	NES08410431	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26984590					SNP	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187313	NES08410431	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62493740 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	within coordinates
Cpgi3027	CpG island 3027	within coordinates
Lrrc75a	leucine rich repeat containing 75A	1970 bp downstream
Rr246930	regulatory region 246930	within coordinates
Rr402627	regulatory region 402627	26 bp downstream
Snord49a	small nucleolar RNA, C/D box 49A	546 bp upstream
Snord49b	small nucleolar RNA, C/D box 49B	172 bp upstream
Snord65	small nucleolar RNA, C/D box 65	1616 bp upstream
Tssr102048	transcription start site region 102048	28 bp downstream
Tssr102049	transcription start site region 102049	43 bp upstream
Tssr102050	transcription start site region 102050	147 bp upstream
Tssr102051	transcription start site region 102051	201 bp upstream
Tssr102052	transcription start site region 102052	267 bp upstream
Tssr102053	transcription start site region 102053	533 bp upstream