rs26984592 SNP Detail

Summary

• ID
  rs26984592
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62493489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTACACA TTTCACACAC TACACACGTT CACAAAGGAC
  TAATAAGTCA GGGAAGACAA CGAGGACGGA AAACCGCGGA AAGGATGTCG AGTCCGCGCT
  K
  AACCCAACAC GCAGGCGCGC TGGAGCTCGC GCGCTCTTCG CTACCCAGAA TCCCCCGGGG
  CGGGGGAGAC CACTCGCTCA ACAGAACGGG GGAGGCCTGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37187315	NES08410429	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26984592					SNP	T	T	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187315	NES08410429	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62493489 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	214 bp upstream
Cpgi3027	CpG island 3027	within coordinates
Rr246930	regulatory region 246930	within coordinates
Rr402627	regulatory region 402627	within coordinates
Snord49a	small nucleolar RNA, C/D box 49A	797 bp upstream
Snord49b	small nucleolar RNA, C/D box 49B	423 bp upstream
Snord65	small nucleolar RNA, C/D box 65	1867 bp upstream
Tssr102048	transcription start site region 102048	204 bp upstream
Tssr102049	transcription start site region 102049	294 bp upstream
Tssr102050	transcription start site region 102050	398 bp upstream
Tssr102051	transcription start site region 102051	452 bp upstream
Tssr102052	transcription start site region 102052	518 bp upstream
Tssr102053	transcription start site region 102053	784 bp upstream