rs26984594 SNP Detail

Summary

• ID
  rs26984594
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62493208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGAAGT GGAAAGAGCA
  GGGGGCAATG GAAATGGATC AAGAGCTCTT CTTGATTCTA CAGTTCTCTA AGGAATGTGA
  TGAGGGCCGT CTGCATAGGG CCTTGAGAGA CTCCGTGGAT ATGTTGTAAA AATAATGGGG
  TGCAGAACGG CCCCAATCAT TACACTTTTG TAACAGCGTT TGTCTTTGAA CGCGGTTTCG
  K
  GTGTGTTAGC GTAGATGAGC CAGGCTCTCC ACCACCCAGT TAGATTATAT AGGCCCGCTT
  TTTTTTTTTT TTTTTTAAAT TTAAAATAGA GACAGGGGCT CATTAAATTG CCCAGGCTGG
  ACTCGAATTC TTGCGTCGGG TTCCTAATCG ATTACGATTA CAGGCCTGCA CTGTCAGGTC
  TGACTACACA TTTCACACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37187317	NES08410445	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26984594					SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187317	NES08410445	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62493208 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	495 bp upstream
Cpgi3027	CpG island 3027	100 bp proximal
Rr246930	regulatory region 246930	within coordinates
Rr402627	regulatory region 402627	206 bp upstream
Snord49a	small nucleolar RNA, C/D box 49A	1078 bp upstream
Snord49b	small nucleolar RNA, C/D box 49B	704 bp upstream
Tssr102048	transcription start site region 102048	485 bp upstream
Tssr102049	transcription start site region 102049	575 bp upstream
Tssr102050	transcription start site region 102050	679 bp upstream
Tssr102051	transcription start site region 102051	733 bp upstream
Tssr102052	transcription start site region 102052	799 bp upstream
Tssr102053	transcription start site region 102053	1065 bp upstream