rs26984652 SNP Detail

Summary

• ID
  rs26984652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62442432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTACTTTC GGTGGCGCAG
  GAAGACAACA GCTACGTAGG AGTGAGCAGT CACGCAACAG ACGCTGCATA AATAGCGGCT
  CGCGCGGCCA CTGAGCTCAG TGACGAGAGG CTTTGTCCGG TTCGGCGGTC TTTCTGTGAG
  GGTGTTTCGA CGCGCTGGGC GGTTTGTGCT TTCATCACAT TTGTTAACAG GTATTTGTCT
  R
  CGGCGTTTGA ATCATGGGAG GATTTAGAGA GGGGGCTTAC GTGGTGCTAA GCGGGCCTTT
  TTTTTCTTGG GGTGGGGGAG GGGAGCGAGG TGACGTGACG CGGCAACGGG CCTTCCGGGA
  AGAGTGGGCC TTGGTCGCGT GCGCGGAGCG GGGGCGGCCC TGGCGCGCGC GCCAGGGAGC
  TTAACGGACG CTTAACCGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37187376	NES08411148	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs26984652					SNP	A	A	A	A	A	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187376	NES08411148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62442432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	within coordinates
Gm12279	predicted gene 12279	510 bp upstream
Gm71785	predicted gene, 71785	576 bp downstream
Rr246927	regulatory region 246927	within coordinates
Rr386162	regulatory region 386162	331 bp downstream
Tssr102022	transcription start site region 102022	1061 bp downstream
Tssr102023	transcription start site region 102023	1006 bp downstream
Tssr102024	transcription start site region 102024	749 bp downstream
Tssr102025	transcription start site region 102025	415 bp downstream
Tssr102026	transcription start site region 102026	360 bp downstream
Tssr102027	transcription start site region 102027	321 bp downstream
Tssr102028	transcription start site region 102028	149 bp downstream
Tssr102029	transcription start site region 102029	129 bp downstream
Tssr102030	transcription start site region 102030	103 bp downstream
Tssr102031	transcription start site region 102031	115 bp upstream
Tssr102032	transcription start site region 102032	132 bp upstream
Tssr102033	transcription start site region 102033	150 bp upstream
Tssr102034	transcription start site region 102034	168 bp upstream
Tssr102035	transcription start site region 102035	242 bp upstream
Tssr108430	transcription start site region 108430	626 bp upstream
Tssr108431	transcription start site region 108431	587 bp upstream
Ubb	ubiquitin B	within coordinates