rs26984653 SNP Detail

Summary

• ID
  rs26984653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62442133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGAACCG AGCCCAGCAA
  CAATCGAGCG GCCCGCGACC TCCACCAATC AGCGTCGGCC TCATCTTTGA CTCCTCACCA
  ATCAGCGCTG GCGCCGCAAG GAGGTTTCCA GAGCTTTCGA GGGAGGGCCC TTTAACTTGG
  ATTCATCCGC GTGATGATTT TTTCAATTTT TTGCACGAGA GGAGACGAGA CGCCGGGAAT
  R
  CAGTGTCTCT CGTTTGGTAG TACTCTTTTC TTTGGTTCTG AAGAATCGGG AGCTCGGCAA
  AAACGCCTAA TTGGTCTGGG GGAGGTGGGG GCCCGCGGAA CTACTTTCGG TGGCGCAGGA
  AGACAACAGC TACGTAGGAG TGAGCAGTCA CGCAACAGAC GCTGCATAAA TAGCGGCTCG
  CGCGGCCACT GAGCTCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37187377	NES08411147	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs26984653					SNP	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187377	NES08411147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62442133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	within coordinates
Gm12279	predicted gene 12279	211 bp upstream
Gm71785	predicted gene, 71785	277 bp downstream
Rr246927	regulatory region 246927	within coordinates
Rr386162	regulatory region 386162	32 bp downstream
Tssr102022	transcription start site region 102022	762 bp downstream
Tssr102023	transcription start site region 102023	707 bp downstream
Tssr102024	transcription start site region 102024	450 bp downstream
Tssr102025	transcription start site region 102025	116 bp downstream
Tssr102026	transcription start site region 102026	61 bp downstream
Tssr102027	transcription start site region 102027	22 bp downstream
Tssr102028	transcription start site region 102028	141 bp upstream
Tssr102029	transcription start site region 102029	154 bp upstream
Tssr102030	transcription start site region 102030	186 bp upstream
Tssr102031	transcription start site region 102031	414 bp upstream
Tssr102032	transcription start site region 102032	431 bp upstream
Tssr102033	transcription start site region 102033	449 bp upstream
Tssr102034	transcription start site region 102034	467 bp upstream
Tssr102035	transcription start site region 102035	541 bp upstream
Tssr108430	transcription start site region 108430	327 bp upstream
Tssr108431	transcription start site region 108431	288 bp upstream
Ubb	ubiquitin B	196 bp upstream