rs26984654 SNP Detail

Summary

• ID
  rs26984654
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62441772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCTTCC AGCCCGGCAG
  CCACCCCACT CCCACCCACA TCTGGGCCCG TGGGCGGCTA AGCCACAAGA CAAAACAACT
  AAAAACACTG GCTACGGAAG CATCAATGCT CATACTGGAG GGGGCCTGGG CGAAGCTAGA
  GTCCAGCCAG GGGGAGCAGG GTGAGGTCGC AATTCACCCT GTGGCGTAAA GCCGCCGAGC
  S
  ATGGGTGCGA GAGAACCACG GGGAACTCGG GACGCGGGGT TCCGGACGCG GGAAGAGAAG
  ACGCCCCTCC CCCACCTCAA GCAGGAAACA TCAGTATTTC GCTAAGGCGA GCGCCCGCAC
  ATGCGCACTC GGTTACTTAG CAACGTCGAC GTTAAACTGC CCGAGAACCG AGCCCAGCAA
  CAATCGAGCG GCCCGCGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss37187378	NES08411146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs26984654					SNP	G	G	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187378	NES08411146	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62441772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	within coordinates
Gm12279	predicted gene 12279	within coordinates
Gm71785	predicted gene, 71785	within coordinates
Rr246927	regulatory region 246927	within coordinates
Rr386162	regulatory region 386162	within coordinates
Tssr102022	transcription start site region 102022	401 bp downstream
Tssr102023	transcription start site region 102023	346 bp downstream
Tssr102024	transcription start site region 102024	89 bp downstream
Tssr102025	transcription start site region 102025	221 bp upstream
Tssr102026	transcription start site region 102026	288 bp upstream
Tssr102027	transcription start site region 102027	316 bp upstream
Tssr102028	transcription start site region 102028	502 bp upstream
Tssr102029	transcription start site region 102029	515 bp upstream
Tssr102030	transcription start site region 102030	547 bp upstream
Tssr102031	transcription start site region 102031	775 bp upstream
Tssr102032	transcription start site region 102032	792 bp upstream
Tssr102033	transcription start site region 102033	810 bp upstream
Tssr102034	transcription start site region 102034	828 bp upstream
Tssr102035	transcription start site region 102035	902 bp upstream
Tssr108430	transcription start site region 108430	within coordinates
Tssr108431	transcription start site region 108431	47 bp downstream
Ubb	ubiquitin B	557 bp upstream