rs26984655 SNP Detail

Summary

• ID
  rs26984655
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62441132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCTGAC TCAGACATAC
  TCTGCTTGTT GAAACAAGGT CCGACTCATG CTTCCTAATA AAAATAAAAT ACTATGCAAA
  GGAGACATTT TCTGAATTTC AATTCACTTC AAATAAAATT CTACCTGCTC TTTATTCTAG
  AAAGCAGACT TTGGGCTGGG GAATCAAACT GGAGCTTTTG GTTCATGCTA GGCAAACCAG
  M
  TATGTTCCTA ACGTTTCCTT CAGTAATATG GTAATAACTC GTAAACCTTT ACAGAGTGAA
  GTTTAATCTG TTAGCGTAGC TAGACTTCTT ACTGTACGGA AGCCGGTAGC CTATGCAAAC
  AAAACTGTTT ACATGGCCAT CCTCGTGACT CCGCATGACA AAGCAATCCG AGCAGTTCTG
  CTCCTTCCTT GTTGATCTCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37187379	NES08411145	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26984655					SNP	C	C	C	C	C	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187379	NES08411145	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62441132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	388 bp proximal
Gm12279	predicted gene 12279	within coordinates
Gm71785	predicted gene, 71785	160 bp upstream
Rr235278	regulatory region 235278	1732 bp distal
Rr246927	regulatory region 246927	within coordinates
Rr250876	regulatory region 250876	1932 bp distal
Rr386162	regulatory region 386162	within coordinates
Tssr102022	transcription start site region 102022	217 bp upstream
Tssr102023	transcription start site region 102023	264 bp upstream
Tssr102024	transcription start site region 102024	503 bp upstream
Tssr102025	transcription start site region 102025	861 bp upstream
Tssr102026	transcription start site region 102026	928 bp upstream
Tssr102027	transcription start site region 102027	956 bp upstream
Tssr102028	transcription start site region 102028	1142 bp upstream
Tssr102029	transcription start site region 102029	1155 bp upstream
Tssr102030	transcription start site region 102030	1187 bp upstream
Tssr102031	transcription start site region 102031	1415 bp upstream
Tssr102032	transcription start site region 102032	1432 bp upstream
Tssr102033	transcription start site region 102033	1450 bp upstream
Tssr102034	transcription start site region 102034	1468 bp upstream
Tssr102035	transcription start site region 102035	1542 bp upstream
Tssr108430	transcription start site region 108430	634 bp downstream
Tssr108431	transcription start site region 108431	687 bp downstream
Ubb	ubiquitin B	1197 bp upstream