rs26986746 SNP Detail

Summary

• ID
  rs26986746
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86797920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTCTGG GTTGGTGAGA
  TAGCATTCCG CATGACTTAA CACCCACATA ACCTTTTCAG GTCCCTCTTT TGGCACACCC
  CAGAGCCTTG CTTACCAAAC TACTTACCAC AACCTTGGCA CACAAATTAG CTCCTCTTTC
  AGGGGCTTTC CACTTTCCCT GCAAATTCAG CTCTAGAACC TTCTTCCAGG TCACTTTCTT
  W
  ATGAAGACTT CACCTCTGAG CTCTCCGGGC GTGTCTGTGT TAGAGCACCT GTCGTGCTCT
  AGGCATTACA TCTATCTGCC TCCTCTCTGT TTGCTCTGAG CTCCTGGCAT ATAGAAGCTC
  ACTCACTCTG CCTTGTGCCT GGCCTTGGCC ATGATTAAGC AAGCCTTCTA TCCTGATTCA
  ATGAGTGAAT GGCCAAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229466	NES08588524	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26986746					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229466	NES08588524	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86797920 () rs orientation: forward

Symbol	Name	Function Class
D11Mit282	DNA segment, Chr 11, Massachusetts Institute of Technology 282	1755 bp distal
Rr237379	regulatory region 237379	520 bp distal
Rr242217	regulatory region 242217	1320 bp distal
Rr252218	regulatory region 252218	within coordinates